petiteFinder: an automated computer vision tool to compute Petite colony frequencies in baker’s yeast (BMC Bioinformatics)
2022
N Leibovich, J Rothschild, S Goyal, A Zilman – “Phenomenology and dynamics of competitive ecosystems beyond the niche-neutral regimes” (PNAS, arxiv)
CJ Nunn, S Goyal – “Contingency and selection in mitochondrial genome dynamics” (eLife)
C Nunn, S Goyal – “Population dynamics of mitochondrial genomes in Saccharomyces cerevisiae reveal tightly constrained mutational trajectories and a simple relationship between genome content and replicative fitness” (APS)
S Goyal, S Rehman, C O’Brien – “Statistical dynamics of tumor initiation and progression” (APS)
M Bonsma-Fisher, S Goyal – “Diversity-generating host-disease coevolution with adaptive immunity” (APS)
S Freedman, A Howe, S Goyal, M Mani – “Inferring the molecular mechanisms that guide developmental bifurcations” (APS)
MA Qazi, SK Salim, KR Brown, et al. – “Characterization of the minimal residual disease state reveals distinct evolutionary trajectories of human glioblastoma” (NCBI)
2021
SL Freedman, B Xu, S Goyal, M Mani – “A dynamical systems treatment of transcriptomic trajectories in hematopoiesis” (Development)
UY Pen, CJ Nunn, S Goyal – “An automated tabletop continuous culturing system with multicolor fluorescence monitoring for microbial gene expression and long-term population dynamics” (ACS Synth. Biol.)
M Smart, S Goyal, A Zilman – “Roles of phenotypic heterogeneity and microenvironment feedback in early tumor development” (Phys Rev. E)
SK Rehman, J Haynes, E Collignon, et al. – “Colorectal cancer cells enter a diapause-like DTP state to survive chemotherapy” (Cell)
SL Freedman, B Xu, S Goyal, M Mani – “Revealing cell-fate bifurcations from transcriptomic trajectories of hematopoiesis”
J Rothschild, N Leibovich, A Zilman, S Goyal – “Abundance transitions in multispecies stochastic Lotka-Volterra”
S Freedman, B Xu, S Goyal, M Mani – “Detecting bifurcations in tissue development”
2020–2019
S Bradde, A Nourmohammad, S Goyal, V Balasubramanian – “The size of the immune repertoire of bacteria”
C Nunn, S Goyal – “A model to explain the propagation of small dysfunctional mitochondrial DNAs in budding yeast”
S Jatav, S Malhotra, FD Miller, A Jha, S Goyal – “Inferring metabolic rewiring in embryonic neural development using single cell data”
N Shakiba, A Fahmy, G Jayakumaran, et al. – “Cell competition during reprogramming gives rise to dominant clones”
H Tao, M Zhu, K Lau, OKW Whitley, et al. – “Oscillatory cortical forces promote three dimensional cell intercalations that shape the murine mandibular arch”
S Goyal, M Bonsma-Fisher – “How adaptive immunity constrains the composition and fate of large bacterial populations”
GC Lui, S Goyal – “What do metabolic constraints inform us about the emergence of early stable bacterial communities?”
2018
SG Madeleine Bonsma-Fisher, “How Adaptive Immunity Constrains the Composition and Fate of Large Bacterial Populations”
S Dasgupta, GD Bader, “Single-cell RNA Sequencing: A New Window into Cell Scale Dynamics”
H Tao, M Zhu, K Lau, “Oscillatory cortical forces promote three dimensional mesenchymal cell intercalations to shape the mandibular arch”
N Shakiba, A Fahmy, G Jayakumaran, “Competition During Reprogramming Gives Rise to Deterministically Elite Clones”
S McGibbon-Gardner, N Shakiba, P Zandstra, “Competition During Reprogramming Gives Rise to Deterministically Elite Clones”
And before
T Chou, S Goyal, S Kim, ISY Chen. “Lineage-tracking of stem cell differentiation: a neutral model of hematopoiesis in rhesus macaque” (2016)
S Goyal, S Kim, ISY Chen, T Chou. “Mechanisms of blood homeostasis: lineage tracking and a neutral model of cell populations in rhesus macaques” (2015)
S Goyal, PW Zandstra. “Chasing blood” (2015)
M Mani, S Goyal, KD Irvine, BI Shraiman. “Collective polarization model for gradient sensing via Dachsous-Fat intercellular signaling” (2013)